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Federated Research Data Repository / dépôt fédéré de données de recherche
Xiao, Dongsheng Extend data deposited 30-Jul-2019 (https://doi.org/10.20383/101.0170) This dataset includes raw wide-field GCaMP image sequences and time stamps of spike trains simultaneously recorded with GCaMP imaging and processed GCaMP images and spike trains: df/f0 with 0.1-10 band pass filter and spike train binned in one frame time. Most experiments were performed toward the end of the mouse light cycle. Mice were anesthetized with isoflurane (0.5–1.0%) or urethane during data collection. Images of the cortical surface were recorded through a pair of front-to-front video lenses coupled to a CCD camera. Calcium indicators were excited with blue-light-emitting diodes (470 nm) with bandpass filters (467–499 nm). Emission fluorescence was filtered using a 510–550 nm bandpass filter. For in vivo single unit recording, the electrode was inserted into the right hemisphere with a 45 degree angle from the lateral surface of the cortex to avoid contact with the region where wide-field imaging was performed. The electrode was first held in the cortex for cortical recordings and then advanced into the sub-cortical areas. https://creativecommons.org/licenses/by/4.0/
UBC Brain Circuits (FRDR) Logo
Federated Research Data Repository / dépôt fédéré de données de recherche
Murphy, Timothy; Xiao, Dongsheng Raw wide-field calcium imaging data was recorded from male awake head-fixed GCaMP6 mice. This dataset is used to discovery cortical activity motifs and generate motif based functional maps. Usage: The main demo code to run: MesoNet_motif_discovery_Democode.m MesoNet_MBFM_multirun_Democode.m The codes are available on the OSF repository: “OSF Storage/4_Data_code” at https://osf.io/svztu/ The demo code was tested on: Operating systems: Windows10 Versions the software has been tested on: Matlab 2020a Expected run time for demo on a "normal" desktop computer: the code may need several hours or days to run. https://creativecommons.org/licenses/by/4.0/
UBC Brain Circuits (FRDR) Logo
Federated Research Data Repository / dépôt fédéré de données de recherche
Xiao, Dongsheng This dataset includes raw wide-field GCaMP image sequences and time stamps of spike trains simultaneously recorded with GCaMP imaging and processed GCaMP images and spike trains: df/f0 with 0.1-10 band pass filter and spike train binned in one frame time. Most experiments were performed toward the end of the mouse light cycle. Mice were anesthetized with isoflurane (0.5–1.0%) or urethane during data collection. Images of the cortical surface were recorded through a pair of front-to-front video lenses coupled to a CCD camera. Calcium indicators were excited with blue-light-emitting diodes (470 nm) with bandpass filters (467–499 nm). Emission fluorescence was filtered using a 510–550 nm bandpass filter. For in vivo single unit recording, the electrode was inserted into the right hemisphere with a 45 degree angle from the lateral surface of the cortex to avoid contact with the region where wide-field imaging was performed. The electrode was first held in the cortex for cortical recordings and then advanced into the sub-cortical areas. https://creativecommons.org/licenses/by/4.0/
UBC Brain Circuits (FRDR) Logo
Federated Research Data Repository / dépôt fédéré de données de recherche
Murphy, Timothy Support data for figures in “Dual brain cortical calcium imaging reveals social interaction-specific correlated activity in mice” Each 7.z file contains multiple folders. Files are named after experimental conditions. Please see the README file for further details. If you use these data, please cite the dataset and the accompanying publication. Abbreviated title: Imaging inter-mouse brain synchronization Nicholas J. Michelson, Federico Bolaños, Luis A. Bolaños, Matilde Balbi, Jeffrey M. LeDue, and Timothy H. Murphy* https://creativecommons.org/licenses/by/4.0/

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